PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0547.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 336aa    MW: 38945.5 Da    PI: 6.0609
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0547.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.8e-32231142102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k ye++ede++k ++sw++  nsfv+ de++f+ ++Lpky+kh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F +g++
  Kaladp0039s0547.1.p  23 FLIKCYEMVEDEANKAVVSWTDIHNSFVINDETDFTLRLLPKYWKHNNFSSFMRQLNIYGFRKVDADR---------WEFANDGFMRGQR 103
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k+
  Kaladp0039s0547.1.p 104 HLLKTISRRKN 114
                          *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-4719112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.6E-3320112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-2920112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-152346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2723112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-156173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-157486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVKSGAAGDG NCDDVGSPPI APFLIKCYEM VEDEANKAVV SWTDIHNSFV INDETDFTLR  60
LLPKYWKHNN FSSFMRQLNI YGFRKVDADR WEFANDGFMR GQRHLLKTIS RRKNIQGTDH  120
RKSVKQIEKA NKACDRVEYF DLWNEVHNLQ IDKKALMQEL VDLRQHQEML DNKLLLLRDR  180
LKGMEKNQQQ MLSFLVMAMR NPGYFVKLLQ PREHNWPNSE KVKNANMLER VMEVSEAAVT  240
SDVMLATDGT VVRYRPPTYQ EGTCPPSLPS KCFSRPKFEI AEGMQEFFMD SELMKTLMDE  300
NQPMLDYQST FVLPDLHDDG LLDHFVFSSP LIDNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D6e-21211216129Heat shock factor protein 1
5d5v_B6e-21211216129Heat shock factor protein 1
5d5u_B6e-21211216129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021749.11e-111PREDICTED: heat stress transcription factor A-8
TrEMBLA0A067FBG61e-110A0A067FBG6_CITSI; Uncharacterized protein
STRINGPOPTR_0010s11490.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.16e-72heat shock transcription factor A8